| Round | Overall | Player |
|---|---|---|
| 1 | 4th | OF Manny Ramirez Bos |
| 2 | 21st | 3B David Wright NYN |
| 3 | 28th | 3B Aramis Ramirez ChN |
| 4 | 45th | OF Carlos Lee Hou |
| 5 | 52nd | RP Brad Lidge Hou |
| 6 | 69th | SP John Smoltz Atl |
| 7 | 76th | RP Chad Cordero Was |
| 8 | 93rd | SP Curt Schilling Bos |
| 9 | 100th | 1B Jason Giambi NYA |
| 10 | 117th | RP Bobby Jenks ChA |
| 11 | 124th | OF Jermaine Dye ChA |
| 12 | 141st | 2B Robinson Cano NYA |
| 13 | 148th | C Ramon Hernandez Bal |
| 14 | 165th | SP Matt Cain SF |
| 15 | 172nd | SP Matt Clement Bos |
| 16 | 189th | SP Gustavo Chacin Tor |
| 17 | 196th | OF Aaron Rowand Phi |
| 18 | 213th | SP Roger Clemens Hou |
| 19 | 220th | 3B Garrett Atkins Col |
| 20 | 237th | C Brian McCann Atl |
| 21 | 244th | 1B Mike Jacobs Fla |
| 22 | 261st | SP Rodrigo Lopez Col |
| 23 | 268th | 2B Ian Kinsler Tex |
| 24 | 285th | OF Bill Hall Mil |
| 25 | 292nd | SS Craig Counsell Ari |
| 26 | 309th | RP Joel Pineiro Bos |
| 27 | 316th | OF Jacque Jones ChN |
| 28 | 333rd | 1B Phil Nevin Min |
| 29 | 340th | SP Orlando Hernandez NYN |