| Round | Overall | Player |
|---|---|---|
| 1 | 7th | 1B David Ortiz Bos |
| 2 | 18th | DH Travis Hafner Cle |
| 3 | 31st | OF Andruw Jones Atl |
| 4 | 42nd | SP Pedro Martinez NYN |
| 5 | 55th | SP Felix Hernandez Sea |
| 6 | 66th | OF Ken Griffey Jr Cin |
| 7 | 79th | RP Huston Street Oak |
| 8 | 90th | C Jason Varitek Bos |
| 9 | 103rd | SS Rafael Furcal LAD |
| 10 | 114th | OF Coco Crisp Bos |
| 11 | 127th | SP C.C. Sabathia Cle |
| 12 | 138th | SP Javier Vazquez ChA |
| 13 | 151st | RP Armando Benitez SF |
| 14 | 162nd | SP Oliver Perez Pit |
| 15 | 175th | SP Mike Mussina NYA |
| 16 | 186th | OF Cliff Floyd ChA |
| 17 | 199th | 3B Chad Tracy Ari |
| 18 | 210th | 3B Mike Lowell Bos |
| 19 | 223rd | DH Mike Sweeney KC |
| 20 | 234th | OF Wily Pena Bos |
| 21 | 247th | RP Dave Weathers Cin |
| 22 | 258th | SP Jon Papelbon Bos |
| 23 | 271st | 2B Josh Barfield Cle |
| 24 | 282nd | 2B Luis Castillo Min |
| 25 | 295th | SP Dave Bush Mil |
| 26 | 306th | SP Bronson Arroyo Cin |
| 27 | 319th | SS Hanley Ramirez Fla |
| 28 | 330th | OF Mark Kotsay Oak |
| 29 | 343rd | C Jeff Mathis LAA |