| Round | Overall | Player |
|---|---|---|
| 1 | 10th | OF Carl Crawford TB |
| 2 | 15th | SP Roy Halladay Tor |
| 3 | 34th | 3B Chone Figgins LAA |
| 4 | 39th | 1B Paul Konerko ChA |
| 5 | 58th | SS Clint Barmes Col |
| 6 | 63rd | SP Mark Buehrle ChA |
| 7 | 82nd | OF Juan Pierre LAD |
| 8 | 87th | SP Mark Mulder StL |
| 9 | 106th | OF Jeff Francoeur Atl |
| 10 | 111th | OF Torii Hunter Min |
| 11 | 130th | SS Edgar Renteria Atl |
| 12 | 135th | RP Jose Valverde Ari |
| 13 | 154th | OF Jonny Gomes TB |
| 14 | 159th | SP Derek Lowe LAD |
| 15 | 178th | C A.J. Pierzynski ChA |
| 16 | 183rd | C Paul Lo Duca NYN |
| 17 | 202nd | 2B Placido Polanco Det |
| 18 | 207th | RP Brian Fuentes Col |
| 19 | 226th | 1B Nick Johnson Was |
| 20 | 231st | 3B Aaron Boone Cle |
| 21 | 250th | SP Brett Tomko LAD |
| 22 | 255th | OF Chris Burke Hou |
| 23 | 274th | SP Steve Trachsel NYN |
| 24 | 279th | SP Aaron Cook Col |
| 25 | 298th | 2B Ray Durham SF |
| 26 | 303rd | SP Vicente Padilla Tex |
| 27 | 322nd | OF Xavier Nady Pit |
| 28 | 327th | OF Rob Mackowiak ChA |
| 29 | 346th | SP Scott Elarton KC |