| Round | Overall | Player |
|---|---|---|
| 1 | 5th | SS Miguel Tejada Bal |
| 2 | 20th | 2B Jeff Kent LAD |
| 3 | 29th | 3B Morgan Ensberg Hou |
| 4 | 44th | 1B Carlos Delgado NYN |
| 5 | 53rd | SP Dontrelle Willis Fla |
| 6 | 68th | OF Jim Edmonds StL |
| 7 | 77th | RP Trevor Hoffman SD |
| 8 | 92nd | SP Andy Pettitte Hou |
| 9 | 101st | SP Jon Garland ChA |
| 10 | 116th | OF Preston Wilson StL |
| 11 | 125th | SP Jeremy Bonderman Det |
| 12 | 140th | OF Jason Lane Hou |
| 13 | 149th | DH Mike Piazza Oak |
| 14 | 164th | SP Chris Capuano Mil |
| 15 | 173rd | RP Ryan Dempster ChN |
| 16 | 188th | SP Jake Westbrook Cle |
| 17 | 197th | OF Moises Alou SF |
| 18 | 212th | 1B Lyle Overbay Tor |
| 19 | 221st | 3B Pedro Feliz SF |
| 20 | 236th | 2B Orlando Hudson Ari |
| 21 | 245th | SS Khalil Greene SD |
| 22 | 260th | SP Jeff Suppan Mil |
| 23 | 269th | OF Nick Swisher Oak |
| 24 | 284th | SP Josh Towers Tor |
| 25 | 293rd | OF Brady Clark Mil |
| 26 | 308th | C Mike Matheny SF |
| 27 | 317th | 1B Lance Niekro SF |
| 28 | 332nd | 1B Rich Aurilia Cin |
| 29 | 341st | SP Dave Williams Cin |