| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | 1B Mark Teixeira Tex |
| 2 | 22nd | OF Adam Dunn Cin |
| 3 | 27th | SP Roy Oswalt Hou |
| 4 | 46th | SS Jhonny Peralta Cle |
| 5 | 51st | RP Mariano Rivera NYA |
| 6 | 70th | RP Billy Wagner NYN |
| 7 | 75th | SP Ben Sheets Mil |
| 8 | 94th | OF Aubrey Huff Bal |
| 9 | 99th | OF Johnny Damon NYA |
| 10 | 118th | 3B Adrian Beltre Sea |
| 11 | 123rd | DH Jim Thome ChA |
| 12 | 142nd | C Jorge Posada NYA |
| 13 | 147th | SP Freddy Garcia ChA |
| 14 | 166th | SP Daniel Cabrera Bal |
| 15 | 171st | SP Chris Young SD |
| 16 | 190th | SP Brad Penny LAD |
| 17 | 195th | OF Geoff Jenkins Mil |
| 18 | 214th | 1B Chris Shelton Det |
| 19 | 219th | DH Jose Vidro Was |
| 20 | 238th | C Rod Barajas Tex |
| 21 | 243rd | OF David Dellucci Cle |
| 22 | 262nd | SP Jarrod Washburn Sea |
| 23 | 267th | OF Raul Ibanez Sea |
| 24 | 286th | SS J.J. Hardy Mil |
| 25 | 291st | RP Chris Reitsma Atl |
| 26 | 310th | SP Jorge Sosa StL |
| 27 | 315th | 3B Vinny Castilla Col |
| 28 | 334th | 2B Dan Uggla Fla |
| 29 | 339th | SP Brandon Claussen Cin |