| Round | Overall | Player |
|---|---|---|
| 1 | 4th | OF Vladimir Guerrero LAA |
| 2 | 21st | SP Jake Peavy SD |
| 3 | 28th | 1B Todd Helton Col |
| 4 | 45th | SS Jimmy Rollins Phi |
| 5 | 52nd | 3B Eric Chavez Oak |
| 6 | 69th | OF Ichiro Suzuki Sea |
| 7 | 76th | SP Josh Beckett Bos |
| 8 | 93rd | DH Jim Thome ChA |
| 9 | 100th | SP A.J. Burnett Tor |
| 10 | 117th | SP Mark Prior ChN |
| 11 | 124th | OF Cliff Floyd ChA |
| 12 | 141st | 2B Tadahito Iguchi ChA |
| 13 | 148th | RP Armando Benitez SF |
| 14 | 165th | C Ben Molina SF |
| 15 | 172nd | SP Scott Kazmir TB |
| 16 | 189th | OF Garret Anderson LAA |
| 17 | 196th | SP Francisco Liriano Min |
| 18 | 213th | RP Tom Gordon Phi |
| 19 | 220th | SP Matt Clement Bos |
| 20 | 237th | 3B Ryan Zimmerman Was |
| 21 | 244th | DH Mike Piazza Oak |
| 22 | 261st | 2B Luis Castillo Min |
| 23 | 268th | SP Anthony Reyes StL |
| 24 | 285th | OF Mark Kotsay Oak |
| 25 | 292nd | SP Josh Towers Tor |
| 26 | 309th | RP Todd Jones Det |
| 27 | 316th | SP Vicente Padilla Tex |
| 28 | 333rd | 1B Ryan Klesko SD |
| 29 | 340th | 3B Melvin Upton TB |