| Round | Overall | Player |
|---|---|---|
| 1 | 7th | 3B Miguel Cabrera Fla |
| 2 | 18th | C Victor Martinez Cle |
| 3 | 31st | SS Derek Jeter NYA |
| 4 | 42nd | OF Grady Sizemore Cle |
| 5 | 55th | 2B Marcus Giles Atl |
| 6 | 66th | OF Barry Bonds SF |
| 7 | 79th | OF Brian S. Giles SD |
| 8 | 90th | OF Vernon Wells Tor |
| 9 | 103rd | SP Zach Duke Pit |
| 10 | 114th | SS Rafael Furcal LAD |
| 11 | 127th | SP Livan Hernandez Ari |
| 12 | 138th | SP Noah Lowry SF |
| 13 | 151st | SP Daniel Cabrera Bal |
| 14 | 162nd | SP Derek Lowe LAD |
| 15 | 175th | SP Javier Vazquez ChA |
| 16 | 186th | SP Jake Westbrook Cle |
| 17 | 199th | DH Mike Sweeney KC |
| 18 | 210th | 1B Nick Johnson Was |
| 19 | 223rd | SP Jeff Suppan Mil |
| 20 | 234th | OF Curtis Granderson Det |
| 21 | 247th | SP Shawn Chacon Pit |
| 22 | 258th | DH Frank Thomas Oak |
| 23 | 271st | SP Bronson Arroyo Cin |
| 24 | 282nd | SP Steve Trachsel NYN |
| 25 | 295th | 2B Luis A. Gonzalez Col |
| 26 | 306th | SP Jeff Francis Col |
| 27 | 319th | 3B Bill Mueller LAD |
| 28 | 330th | C Javier Valentin Cin |
| 29 | 343rd | OF Shannon Stewart Min |