| Round | Overall | Player |
|---|---|---|
| 1 | 10th | 3B David Wright NYN |
| 2 | 15th | OF Bobby Abreu NYA |
| 3 | 34th | 1B Lance Berkman Hou |
| 4 | 39th | SS Jhonny Peralta Cle |
| 5 | 58th | SP John Smoltz Atl |
| 6 | 63rd | 2B Rickie Weeks Mil |
| 7 | 82nd | OF Brad Wilkerson Tex |
| 8 | 87th | OF Matt Holliday Col |
| 9 | 106th | SP John Patterson Was |
| 10 | 111th | SP Freddy Garcia ChA |
| 11 | 130th | OF Magglio Ordonez Det |
| 12 | 135th | SP Doug Davis Ari |
| 13 | 154th | SP Kevin Millwood Tex |
| 14 | 159th | 1B Dan Johnson Oak |
| 15 | 178th | SP Jae Weong Seo TB |
| 16 | 183rd | OF Ryan Freel Cin |
| 17 | 202nd | SP Carlos Silva Min |
| 18 | 207th | C Jason Kendall Oak |
| 19 | 226th | OF Jay Gibbons Bal |
| 20 | 231st | SS Carlos Guillen Det |
| 21 | 250th | SP Paul Byrd Cle |
| 22 | 255th | 3B Joe Crede ChA |
| 23 | 274th | SP Greg Maddux SD |
| 24 | 279th | OF Rondell White Min |
| 25 | 298th | SP Dave Bush Mil |
| 26 | 303rd | SP Jerome Williams ChN |
| 27 | 322nd | SP Ted Lilly ChA |
| 28 | 327th | C Mike Lieberthal Phi |
| 29 | 346th | OF Brad Hawpe Col |