| Round | Overall | Player |
|---|---|---|
| 1 | 11th | SS Mike Young Tex |
| 2 | 14th | OF Adam Dunn Cin |
| 3 | 35th | SP Pedro Martinez NYN |
| 4 | 38th | 1B Richie Sexson Sea |
| 5 | 59th | RP Brad Lidge Hou |
| 6 | 62nd | RP Joe Nathan Min |
| 7 | 83rd | 3B Chipper Jones Atl |
| 8 | 86th | SP Mark Mulder StL |
| 9 | 107th | OF Coco Crisp Bos |
| 10 | 110th | OF Aubrey Huff Bal |
| 11 | 131st | 2B Robinson Cano NYA |
| 12 | 134th | OF J.D. Drew LAD |
| 13 | 155th | C Ramon Hernandez Bal |
| 14 | 158th | SP Joe Blanton Oak |
| 15 | 179th | 1B Chris Shelton Det |
| 16 | 182nd | SS Edgar Renteria Atl |
| 17 | 203rd | SP Jon Lieber Phi |
| 18 | 206th | OF Juan Pierre LAD |
| 19 | 227th | RP Mike Gonzalez Atl |
| 20 | 230th | 2B Ian Kinsler Tex |
| 21 | 251st | C Jeff Mathis LAA |
| 22 | 254th | 1B Phil Nevin Min |
| 23 | 275th | 1B Casey Blake Cle |
| 24 | 278th | OF Craig Monroe Det |
| 25 | 299th | 3B Brandon Inge Det |
| 26 | 302nd | RP Danys Baez Bal |
| 27 | 323rd | 3B Corey Koskie Mil |
| 28 | 326th | SP Ryan Madson Phi |
| 29 | 347th | SP Victor Zambrano NYN |