| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | 1B Mark Teixeira Tex |
| 2 | 22nd | SP Chris Carpenter StL |
| 3 | 27th | 1B Ryan Howard Phi |
| 4 | 46th | OF Carlos Lee Hou |
| 5 | 51st | SP Dontrelle Willis Fla |
| 6 | 70th | OF Ken Griffey Jr Cin |
| 7 | 75th | C Joe Mauer Min |
| 8 | 94th | 2B Felipe Lopez Was |
| 9 | 99th | 2B Brian Roberts Bal |
| 10 | 118th | 3B Adrian Beltre Sea |
| 11 | 123rd | OF Torii Hunter Min |
| 12 | 142nd | SP Jon Garland ChA |
| 13 | 147th | SP Chris Capuano Mil |
| 14 | 166th | OF Jason Lane Hou |
| 15 | 171st | SP Jason Marquis ChA |
| 16 | 190th | 1B Mike Jacobs Fla |
| 17 | 195th | SS Khalil Greene SD |
| 18 | 214th | SP Jorge Sosa StL |
| 19 | 219th | 2B Craig Biggio Hou |
| 20 | 238th | 3B Edwin Encarnacion Cin |
| 21 | 243rd | SP Esteban Loaiza Oak |
| 22 | 262nd | OF Wily Pena Bos |
| 23 | 267th | OF David Dellucci Cle |
| 24 | 286th | RP Chris Ray Bal |
| 25 | 291st | C Jason LaRue KC |
| 26 | 310th | SP Aaron Cook Col |
| 27 | 315th | SP Neal Cotts ChA |
| 28 | 334th | OF Delmon Young TB |
| 29 | 339th | 1B Kevin Youkilis Bos |