| Round | Overall | Player |
|---|---|---|
| 1 | 1st | 3B Alex Rodriguez NYA |
| 2 | 24th | OF Alfonso Soriano ChA |
| 3 | 25th | OF Andruw Jones Atl |
| 4 | 48th | SS Rafael Furcal LAD |
| 5 | 49th | SP Randy Johnson NYA |
| 6 | 72nd | RP B.J. Ryan Tor |
| 7 | 73rd | OF Hideki Matsui NYA |
| 8 | 96th | SP Scott Kazmir TB |
| 9 | 97th | OF Aubrey Huff Bal |
| 10 | 120th | C Ivan Rodriguez Det |
| 11 | 121st | SP Freddy Garcia ChA |
| 12 | 144th | SS Carlos Guillen Det |
| 13 | 145th | OF Magglio Ordonez Det |
| 14 | 168th | SP Noah Lowry SF |
| 15 | 169th | OF Rocco Baldelli TB |
| 16 | 192nd | RP Chris Ray Bal |
| 17 | 193rd | SP Erik Bedard Bal |
| 18 | 216th | 1B Sean Casey Det |
| 19 | 217th | SP Oliver Perez Pit |
| 20 | 240th | OF Matt Murton ChN |
| 21 | 241st | RP Chris Reitsma Atl |
| 22 | 264th | C Rod Barajas Tex |
| 23 | 265th | SP Paul Maholm Pit |
| 24 | 288th | OF Emil Brown KC |
| 25 | 289th | 1B Adrian Gonzalez SD |
| 26 | 312th | SP Kyle Lohse Cin |
| 27 | 313th | SS Russ Adams Tor |
| 28 | 336th | SP Horacio Ramirez Atl |
| 29 | 337th | SP Runelvys Hernandez KC |