| Round | Overall | Player |
|---|---|---|
| 1 | 4th | OF Vladimir Guerrero LAA |
| 2 | 21st | OF Carl Crawford TB |
| 3 | 28th | 3B Chone Figgins LAA |
| 4 | 45th | RP Mariano Rivera NYA |
| 5 | 52nd | RP Billy Wagner NYN |
| 6 | 69th | 2B Jeff Kent LAD |
| 7 | 76th | SS Jose Reyes NYN |
| 8 | 93rd | SP Andy Pettitte Hou |
| 9 | 100th | SP C.C. Sabathia Cle |
| 10 | 117th | SP Zach Duke Pit |
| 11 | 124th | OF Cliff Floyd ChA |
| 12 | 141st | SP Kevin Millwood Tex |
| 13 | 148th | 1B Shea Hillenbrand LAA |
| 14 | 165th | OF Scott Podsednik ChA |
| 15 | 172nd | 1B Nomar Garciaparra LAD |
| 16 | 189th | DH Javy Lopez Bos |
| 17 | 196th | SP Brandon McCarthy Tex |
| 18 | 213th | OF Willy Taveras Hou |
| 19 | 220th | SP Brad Penny LAD |
| 20 | 237th | C Mike Lieberthal Phi |
| 21 | 244th | SP Gustavo Chacin Tor |
| 22 | 261st | 1B Adam LaRoche Pit |
| 23 | 268th | OF Craig Monroe Det |
| 24 | 285th | 2B Luis Castillo Min |
| 25 | 292nd | 3B Tony Batista Min |
| 26 | 309th | SS David Eckstein StL |
| 27 | 316th | RP Danys Baez Bal |
| 28 | 333rd | C Yadier Molina StL |
| 29 | 340th | SP Gavin Floyd ChN |