| Round | Overall | Player |
|---|---|---|
| 1 | 7th | 3B Miguel Cabrera Fla |
| 2 | 18th | C Victor Martinez Cle |
| 3 | 31st | SP Jake Peavy SD |
| 4 | 42nd | RP Francisco Rodriguez LAA |
| 5 | 55th | RP Huston Street Oak |
| 6 | 66th | 2B Rickie Weeks Mil |
| 7 | 79th | SP Ben Sheets Mil |
| 8 | 90th | RP Bobby Jenks ChA |
| 9 | 103rd | SS Clint Barmes Col |
| 10 | 114th | 1B Justin Morneau Min |
| 11 | 127th | SP Livan Hernandez Ari |
| 12 | 138th | 3B Edwin Encarnacion Cin |
| 13 | 151st | OF Nick Swisher Oak |
| 14 | 162nd | OF Milton Bradley Oak |
| 15 | 175th | SP Francisco Liriano Min |
| 16 | 186th | C Ramon Hernandez Bal |
| 17 | 199th | OF Aaron Rowand Phi |
| 18 | 210th | SS Juan Uribe ChA |
| 19 | 223rd | OF Mike Cameron SD |
| 20 | 234th | 1B Lyle Overbay Tor |
| 21 | 247th | SP Jarrod Washburn Sea |
| 22 | 258th | SP Esteban Loaiza Oak |
| 23 | 271st | SP Chien-Ming Wang NYA |
| 24 | 282nd | OF Brad Hawpe Col |
| 25 | 295th | C Johnny Estrada Mil |
| 26 | 306th | 2B Aaron Hill Tor |
| 27 | 319th | SP Jae Weong Seo TB |
| 28 | 330th | OF Jeromy Burnitz Pit |
| 29 | 343rd | C Ryan Doumit Pit |