| Round | Overall | Player |
|---|---|---|
| 1 | 10th | 1B Derrek Lee ChN |
| 2 | 15th | 2B Chase Utley Phi |
| 3 | 34th | 1B Lance Berkman Hou |
| 4 | 39th | SP Carlos Zambrano ChN |
| 5 | 58th | 3B Hank Blalock Tex |
| 6 | 63rd | RP Chad Cordero Was |
| 7 | 82nd | OF Pat Burrell Phi |
| 8 | 87th | SP Mark Prior ChN |
| 9 | 106th | 3B Chipper Jones Atl |
| 10 | 111th | OF Jeff Francoeur Atl |
| 11 | 130th | OF Brad Wilkerson Tex |
| 12 | 135th | SP Javier Vazquez ChA |
| 13 | 154th | OF Geoff Jenkins Mil |
| 14 | 159th | SP Joe Blanton Oak |
| 15 | 178th | SP Jon Lieber Phi |
| 16 | 183rd | SP Jose Contreras ChA |
| 17 | 202nd | SS Julio Lugo Bos |
| 18 | 207th | C Paul Lo Duca NYN |
| 19 | 226th | OF Jay Gibbons Bal |
| 20 | 231st | 2B Jose Castillo Pit |
| 21 | 250th | SP Jason Marquis ChA |
| 22 | 255th | SS Orlando Cabrera LAA |
| 23 | 274th | SP Kenny Rogers Det |
| 24 | 279th | 3B Pedro Feliz SF |
| 25 | 298th | OF Juan Encarnacion StL |
| 26 | 303rd | 1B Ben Broussard Sea |
| 27 | 322nd | RP Joel Pineiro Bos |
| 28 | 327th | SP Vicente Padilla Tex |
| 29 | 346th | C John Buck KC |