| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | 1B Albert Pujols StL |
| 2 | 23rd | OF Adam Dunn Cin |
| 3 | 26th | SS Jhonny Peralta Cle |
| 4 | 47th | 1B Carlos Delgado NYN |
| 5 | 50th | SP Felix Hernandez Sea |
| 6 | 71st | OF Barry Bonds SF |
| 7 | 74th | 3B Troy Glaus Tor |
| 8 | 95th | SP Brandon Webb Ari |
| 9 | 98th | OF Jeremy Hermida Fla |
| 10 | 119th | SP John Patterson Was |
| 11 | 122nd | C Kenji Johjima Sea |
| 12 | 143rd | SP Jeremy Bonderman Det |
| 13 | 146th | 2B Tadahito Iguchi ChA |
| 14 | 167th | RP Eddie Guardado Cin |
| 15 | 170th | RP Todd Jones Det |
| 16 | 191st | 3B Garrett Atkins Col |
| 17 | 194th | 3B Melvin Upton TB |
| 18 | 215th | SP Roger Clemens Hou |
| 19 | 218th | OF Austin Kearns Was |
| 20 | 239th | DH Frank Thomas Oak |
| 21 | 242nd | SP Kelvim Escobar LAA |
| 22 | 263rd | SS J.J. Hardy Mil |
| 23 | 266th | SP Justin Verlander Det |
| 24 | 287th | SP Odalis Perez KC |
| 25 | 290th | C Yorvit Torrealba Col |
| 26 | 311th | 3B Andy Marte Cle |
| 27 | 314th | OF Jacque Jones ChN |
| 28 | 335th | RP Scott Baker Min |
| 29 | 338th | SP Pete Walker Tor |