| Round | Overall | Player |
|---|---|---|
| 1 | 6th | OF Jason Bay Pit |
| 2 | 19th | SP Dontrelle Willis Fla |
| 3 | 30th | OF Grady Sizemore Cle |
| 4 | 43rd | SS Bobby Crosby Oak |
| 5 | 54th | RP Brad Lidge Hou |
| 6 | 67th | 3B Morgan Ensberg Hou |
| 7 | 78th | 2B Brian Roberts Bal |
| 8 | 91st | SP Barry Zito Oak |
| 9 | 102nd | SP Cliff Lee Cle |
| 10 | 115th | 1B Prince Fielder Mil |
| 11 | 126th | RP Ryan Dempster ChN |
| 12 | 139th | OF Torii Hunter Min |
| 13 | 150th | SP Carlos Silva Min |
| 14 | 163rd | 3B Ryan Zimmerman Was |
| 15 | 174th | SP Chris Capuano Mil |
| 16 | 187th | 2B Placido Polanco Det |
| 17 | 198th | 1B Casey Kotchman LAA |
| 18 | 211th | OF Jason Lane Hou |
| 19 | 222nd | OF Raul Ibanez Sea |
| 20 | 235th | OF Brady Clark Mil |
| 21 | 246th | SP Paul Byrd Cle |
| 22 | 259th | RP Chad Orvella TB |
| 23 | 270th | 1B Conor Jackson Ari |
| 24 | 283rd | SS Craig Counsell Ari |
| 25 | 294th | 1B Rich Aurilia Cin |
| 26 | 307th | OF Joey Gathright KC |
| 27 | 318th | C Jason LaRue KC |
| 28 | 331st | SP Mike Maroth Det |
| 29 | 342nd | SP Neal Cotts ChA |