| Round | Overall | Player |
|---|---|---|
| 1 | 9th | 1B David Ortiz Bos |
| 2 | 16th | OF Bobby Abreu NYA |
| 3 | 33rd | OF Gary Sheffield Det |
| 4 | 40th | SS Derek Jeter NYA |
| 5 | 57th | RP Joe Nathan Min |
| 6 | 64th | 3B Eric Chavez Oak |
| 7 | 81st | SP Bartolo Colon LAA |
| 8 | 88th | SP John Smoltz Atl |
| 9 | 105th | SP Curt Schilling Bos |
| 10 | 112th | 1B Jason Giambi NYA |
| 11 | 129th | RP Derrick Turnbow Mil |
| 12 | 136th | 3B Melvin Mora Bal |
| 13 | 153rd | 2B Mark Loretta Bos |
| 14 | 160th | OF Kevin Mench Mil |
| 15 | 177th | SP Kerry Wood ChN |
| 16 | 184th | DH Mike Piazza Oak |
| 17 | 201st | OF Wily Pena Bos |
| 18 | 208th | SP Ervin Santana LAA |
| 19 | 225th | SP Mike Mussina NYA |
| 20 | 232nd | C Brian McCann Atl |
| 21 | 249th | 2B Craig Biggio Hou |
| 22 | 256th | OF Bill Hall Mil |
| 23 | 273rd | SP Greg Maddux SD |
| 24 | 280th | OF David Dellucci Cle |
| 25 | 297th | 1B Phil Nevin Min |
| 26 | 304th | 1B Dallas McPherson LAA |
| 27 | 321st | 1B Ryan Klesko SD |
| 28 | 328th | SP Jamie Moyer Phi |
| 29 | 345th | SP Tim Wakefield Bos |