| Round | Overall | Player |
|---|---|---|
| 1 | 12th | 3B David Wright NYN |
| 2 | 13th | SS Mike Young Tex |
| 3 | 36th | 1B Richie Sexson Sea |
| 4 | 37th | SP Rich Harden Oak |
| 5 | 60th | 2B Marcus Giles Atl |
| 6 | 61st | OF Carlos Lee Hou |
| 7 | 84th | SP Brett Myers Phi |
| 8 | 85th | SP John Lackey LAA |
| 9 | 108th | OF Matt Holliday Col |
| 10 | 109th | OF Coco Crisp Bos |
| 11 | 132nd | DH Jim Thome ChA |
| 12 | 133rd | SP Dan Haren Oak |
| 13 | 156th | C Michael Barrett ChN |
| 14 | 157th | RP Tom Gordon Phi |
| 15 | 180th | OF Shawn Green NYN |
| 16 | 181st | SP Jeff Weaver Sea |
| 17 | 204th | SS Khalil Greene SD |
| 18 | 205th | RP Brian Fuentes Col |
| 19 | 228th | 1B Nick Johnson Was |
| 20 | 229th | 3B Aaron Boone Cle |
| 21 | 252nd | 2B Ray Durham SF |
| 22 | 253rd | SP Jeff Suppan Mil |
| 23 | 276th | OF Mark Kotsay Oak |
| 24 | 277th | SP Brad Radke Min |
| 25 | 300th | DH Dmitri Young Det |
| 26 | 301st | SP Bruce Chen Bal |
| 27 | 324th | OF David DeJesus KC |
| 28 | 325th | SP Jeff Francis Col |
| 29 | 348th | C Damian Miller Mil |