| Round | Overall | Player |
|---|---|---|
| 1 | 4th | 1B Albert Pujols StL |
| 2 | 21st | OF Gary Sheffield Det |
| 3 | 28th | SP Randy Johnson NYA |
| 4 | 45th | OF Johnny Damon NYA |
| 5 | 52nd | 1B Jason Giambi NYA |
| 6 | 69th | RP Mariano Rivera NYA |
| 7 | 76th | C Jorge Posada NYA |
| 8 | 93rd | OF Cliff Floyd ChA |
| 9 | 100th | SP Mike Mussina NYA |
| 10 | 117th | SS Julio Lugo Bos |
| 11 | 124th | SP Mark Prior ChN |
| 12 | 141st | 2B Tadahito Iguchi ChA |
| 13 | 148th | 3B Garrett Atkins Col |
| 14 | 165th | RP Tom Gordon Phi |
| 15 | 172nd | OF Juan Pierre LAD |
| 16 | 189th | 3B Mike Lowell Bos |
| 17 | 196th | SP Jon Lieber Phi |
| 18 | 213th | SP Shawn Chacon Pit |
| 19 | 220th | SS Craig Counsell Ari |
| 20 | 237th | 2B Luis Castillo Min |
| 21 | 244th | C Paul Lo Duca NYN |
| 22 | 261st | OF Mark Kotsay Oak |
| 23 | 268th | SP Brandon McCarthy Tex |
| 24 | 285th | OF Jose Cruz Jr LAD |
| 25 | 292nd | OF Steve Finley SF |
| 26 | 309th | SP Mark Redman KC |
| 27 | 316th | OF Bernie Williams NYA |
| 28 | 333rd | SP Jaret Wright Bal |
| 29 | 340th | OF Bubba Crosby NYA |