| Round | Overall | Player |
|---|---|---|
| 1 | 7th | OF Manny Ramirez Bos |
| 2 | 18th | C Victor Martinez Cle |
| 3 | 31st | SP Carlos Zambrano ChN |
| 4 | 42nd | OF Hideki Matsui NYA |
| 5 | 55th | 1B Paul Konerko ChA |
| 6 | 66th | 2B Jorge Cantu TB |
| 7 | 79th | RP Joe Nathan Min |
| 8 | 90th | SP Curt Schilling Bos |
| 9 | 103rd | RP B.J. Ryan Tor |
| 10 | 114th | SP John Lackey LAA |
| 11 | 127th | OF Brad Wilkerson Tex |
| 12 | 138th | 3B Pedro Feliz SF |
| 13 | 151st | SP Kevin Millwood Tex |
| 14 | 162nd | SP Matt Clement Bos |
| 15 | 175th | OF Jay Gibbons Bal |
| 16 | 186th | SS Orlando Cabrera LAA |
| 17 | 199th | SP Aaron Harang Cin |
| 18 | 210th | OF Mike Cameron SD |
| 19 | 223rd | 1B Lyle Overbay Tor |
| 20 | 234th | SS J.J. Hardy Mil |
| 21 | 247th | OF Ryan Freel Cin |
| 22 | 258th | C Jason Kendall Oak |
| 23 | 271st | 3B Chad Tracy Ari |
| 24 | 282nd | OF Randy Winn SF |
| 25 | 295th | RP Chad Orvella TB |
| 26 | 306th | SP Ramon Ortiz Was |
| 27 | 319th | 1B Eric Hinske Bos |
| 28 | 330th | 1B Ryan Klesko SD |
| 29 | 343rd | SP Victor Zambrano NYN |