| Round | Overall | Player |
|---|---|---|
| 1 | 10th | OF Andruw Jones Atl |
| 2 | 15th | 2B Chase Utley Phi |
| 3 | 34th | OF Carl Crawford TB |
| 4 | 39th | SS Jhonny Peralta Cle |
| 5 | 58th | OF Grady Sizemore Cle |
| 6 | 63rd | OF Jeff Francoeur Atl |
| 7 | 82nd | SP Tim Hudson Atl |
| 8 | 87th | 3B Adrian Beltre Sea |
| 9 | 106th | 2B Rickie Weeks Mil |
| 10 | 111th | 1B Justin Morneau Min |
| 11 | 130th | SP C.C. Sabathia Cle |
| 12 | 135th | SP Brett Myers Phi |
| 13 | 154th | SP Dan Haren Oak |
| 14 | 159th | C Brian McCann Atl |
| 15 | 178th | SP Joe Blanton Oak |
| 16 | 183rd | SP Kerry Wood ChN |
| 17 | 202nd | OF Rocco Baldelli TB |
| 18 | 207th | SP Oliver Perez Pit |
| 19 | 226th | 1B Chris Shelton Det |
| 20 | 231st | OF Bill Hall Mil |
| 21 | 250th | SP Ervin Santana LAA |
| 22 | 255th | SP Odalis Perez KC |
| 23 | 274th | SP Kyle Davies Atl |
| 24 | 279th | 3B Brandon Inge Det |
| 25 | 298th | SP John Thomson Atl |
| 26 | 303rd | SP Paul Maholm Pit |
| 27 | 322nd | SP Horacio Ramirez Atl |
| 28 | 327th | DH Dmitri Young Det |
| 29 | 346th | C John Buck KC |