| Round | Overall | Player |
|---|---|---|
| 1 | 8th | 1B Derrek Lee ChN |
| 2 | 17th | OF Jason Bay Pit |
| 3 | 32nd | 2B Jeff Kent LAD |
| 4 | 41st | 3B Morgan Ensberg Hou |
| 5 | 56th | SP Rich Harden Oak |
| 6 | 65th | SS Rafael Furcal LAD |
| 7 | 80th | RP Chad Cordero Was |
| 8 | 89th | OF Aubrey Huff Bal |
| 9 | 104th | OF Matt Holliday Col |
| 10 | 113th | RP Jason Isringhausen StL |
| 11 | 128th | SP Cliff Lee Cle |
| 12 | 137th | RP Ryan Dempster ChN |
| 13 | 152nd | SP Brandon Webb Ari |
| 14 | 161st | C Ramon Hernandez Bal |
| 15 | 176th | OF Jason Lane Hou |
| 16 | 185th | SP Esteban Loaiza Oak |
| 17 | 200th | SP Jeff Suppan Mil |
| 18 | 209th | OF Raul Ibanez Sea |
| 19 | 224th | 1B Dan Johnson Oak |
| 20 | 233rd | SP Chris Capuano Mil |
| 21 | 248th | DH Jose Vidro Was |
| 22 | 257th | SP Gustavo Chacin Tor |
| 23 | 272nd | C Mike Lieberthal Phi |
| 24 | 281st | SP Bruce Chen Bal |
| 25 | 296th | 3B Bill Mueller LAD |
| 26 | 305th | SP Brandon Claussen Cin |
| 27 | 320th | SS Angel Berroa KC |
| 28 | 329th | OF Reggie Sanders KC |
| 29 | 344th | OF Brian N. Anderson ChA |