| Round | Overall | Player |
|---|---|---|
| 1 | 1st | 1B Albert Pujols StL |
| 2 | 24th | OF Carlos Lee Hou |
| 3 | 25th | SS Mike Young Tex |
| 4 | 48th | RP Mariano Rivera NYA |
| 5 | 49th | OF Jermaine Dye ChA |
| 6 | 72nd | SP John Smoltz Atl |
| 7 | 73rd | SP Barry Zito SF |
| 8 | 96th | RP Chad Cordero Was |
| 9 | 97th | OF Pat Burrell Phi |
| 10 | 120th | SP Freddy Garcia Phi |
| 11 | 121st | SP Derek Lowe LAD |
| 12 | 144th | SP Jake Westbrook Cle |
| 13 | 145th | OF Gary Matthews Jr. LAA |
| 14 | 168th | SS Felipe Lopez Was |
| 15 | 169th | 3B Morgan Ensberg SD |
| 16 | 192nd | SP Mark Buehrle ChA |
| 17 | 193rd | SP Greg Maddux SD |
| 18 | 216th | OF Ken Griffey Jr Cin |
| 19 | 217th | SP Bartolo Colon LAA |
| 20 | 240th | SS Orlando Cabrera ChA |
| 21 | 241st | 1B Casey Kotchman LAA |
| 22 | 264th | 3B Pedro Feliz SF |
| 23 | 265th | OF Coco Crisp Bos |
| 24 | 288th | 2B Jose Lopez Sea |
| 25 | 289th | SP Joe Saunders LAA |
| 26 | 312th | OF Nelson Cruz Tex |
| 27 | 313th | SP Jamie Moyer Phi |
| 28 | 336th | C Johnny Estrada NYN |
| 29 | 337th | C Gregg Zaun Tor |