| Round | Overall | Player |
|---|---|---|
| 1 | 4th | OF Alfonso Soriano ChN |
| 2 | 21st | C Joe Mauer Min |
| 3 | 28th | SP Brandon Webb Ari |
| 4 | 45th | 1B Prince Fielder Mil |
| 5 | 52nd | OF Johnny Damon NYA |
| 6 | 69th | SS Stephen Drew Ari |
| 7 | 76th | SP Jeremy Bonderman Det |
| 8 | 93rd | 2B Rickie Weeks Mil |
| 9 | 100th | 1B Lyle Overbay Tor |
| 10 | 117th | SP Kelvim Escobar LAA |
| 11 | 124th | SP Tim Hudson Atl |
| 12 | 141st | 3B Hank Blalock Tex |
| 13 | 148th | OF Curtis Granderson Det |
| 14 | 165th | RP Armando Benitez Fla |
| 15 | 172nd | OF Chris Young Ari |
| 16 | 189th | RP Brad Lidge Phi |
| 17 | 196th | SP Javier Vazquez ChA |
| 18 | 213th | OF Carlos Quentin ChA |
| 19 | 220th | SP Ted Lilly ChN |
| 20 | 237th | SP Zach Duke Pit |
| 21 | 244th | SP Anthony Reyes StL |
| 22 | 261st | OF Ryan Freel Cin |
| 23 | 268th | 2B Kelly Johnson Atl |
| 24 | 285th | 3B Andy Marte Cle |
| 25 | 292nd | SP Carl Pavano NYA |
| 26 | 309th | SS Jack Wilson Pit |
| 27 | 316th | C Mike Napoli LAA |
| 28 | 333rd | 2B Placido Polanco Det |
| 29 | 340th | 1B Shea Hillenbrand LAD |