| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | 1B David Ortiz Bos |
| 2 | 22nd | SS Miguel Tejada Hou |
| 3 | 27th | C Victor Martinez Cle |
| 4 | 46th | 3B Troy Glaus Tor |
| 5 | 51st | SP Jon Papelbon Bos |
| 6 | 70th | SP C.C. Sabathia Cle |
| 7 | 75th | OF Barry Bonds SF |
| 8 | 94th | OF Magglio Ordonez Det |
| 9 | 99th | SP Josh Beckett Bos |
| 10 | 118th | 2B Tadahito Iguchi Phi |
| 11 | 123rd | SP A.J. Burnett Tor |
| 12 | 142nd | RP Bob Wickman Atl |
| 13 | 147th | OF Brad Hawpe Col |
| 14 | 166th | DH Mike Piazza Oak |
| 15 | 171st | SP Jason Jennings Hou |
| 16 | 190th | SP Kenny Rogers Det |
| 17 | 195th | RP Todd Jones Det |
| 18 | 214th | OF Mike Cameron SD |
| 19 | 219th | 1B Kevin Youkilis Bos |
| 20 | 238th | 2B Freddy Sanchez Pit |
| 21 | 243rd | OF Moises Alou NYN |
| 22 | 262nd | C David Ross Cin |
| 23 | 267th | SP Jeff Suppan Mil |
| 24 | 286th | SP Vicente Padilla Tex |
| 25 | 291st | SP Shawn Hill Was |
| 26 | 310th | SS David Eckstein StL |
| 27 | 315th | 2B Craig Biggio Hou |
| 28 | 334th | SP Jarrod Washburn Sea |
| 29 | 339th | SP Aaron Cook Col |