| Round | Overall | Player |
|---|---|---|
| 1 | 5th |
1B
Ryan Howard
|
| 2 | 20th |
3B
Garrett Atkins
|
| 3 | 29th |
OF
Carl Crawford
|
| 4 | 44th |
OF
Jermaine Dye
|
| 5 | 53rd |
DH
Jim Thome
|
| 6 | 68th |
SP
Jon Papelbon
|
| 7 | 77th |
SP
Daisuke Matsuzaka
|
| 8 | 92nd |
RP
Bobby Jenks
|
| 9 | 101st |
SP
Randy Johnson
|
| 10 | 116th |
2B
Rickie Weeks
|
| 11 | 125th |
SP
Roger Clemens
|
| 12 | 140th |
SS
Julio Lugo
|
| 13 | 149th |
C
Ivan Rodriguez
|
| 14 | 164th |
OF
Jim Edmonds
|
| 15 | 173rd |
RP
Brian Fuentes
|
| 16 | 188th |
SP
Jose Contreras
|
| 17 | 197th |
OF
Chris Duncan
|
| 18 | 212th |
SP
Javier Vazquez
|
| 19 | 221st |
SP
Pedro Martinez
|
| 20 | 236th |
OF
Juan Pierre
|
| 21 | 245th |
1B
Shea Hillenbrand
|
| 22 | 260th | RP Josh Johnson |
| 23 | 269th |
SS
Omar Vizquel
|
| 24 | 284th |
SP
Mark Prior
|
| 25 | 293rd |
3B
Andy Marte
|
| 26 | 308th |
C
Jason Kendall
|
| 27 | 317th |
2B
Adam Kennedy
|
| 28 | 332nd |
SP
Esteban Loaiza
|
| 29 | 341st |
SP
Shawn Hill
|