| Round | Overall | Player |
|---|---|---|
| 1 | 9th |
OF
Carlos Beltran
|
| 2 | 16th |
1B
Lance Berkman
|
| 3 | 33rd |
SS
Jimmy Rollins
|
| 4 | 40th |
OF
Vernon Wells
|
| 5 | 57th |
RP
B.J. Ryan
|
| 6 | 64th |
RP
Trevor Hoffman
|
| 7 | 81st |
SP
John Lackey
|
| 8 | 88th |
SP
Felix Hernandez
|
| 9 | 105th |
OF
Alexis Rios
|
| 10 | 112th |
3B
Hank Blalock
|
| 11 | 129th |
SP
A.J. Burnett
|
| 12 | 136th |
2B
Howie Kendrick
|
| 13 | 153rd |
SP
Ervin Santana
|
| 14 | 160th |
OF
Mark Teahen
|
| 15 | 177th |
SP
Rich Hill
|
| 16 | 184th |
OF
Brian S. Giles
|
| 17 | 201st |
SP
John Patterson
|
| 18 | 208th |
3B
Morgan Ensberg
|
| 19 | 225th |
2B
Orlando Hudson
|
| 20 | 232nd |
C
Johnny Estrada
|
| 21 | 249th |
SP
Bartolo Colon
|
| 22 | 256th |
3B
Ty Wigginton
|
| 23 | 273rd |
OF
Chris Young
|
| 24 | 280th |
RP
Salomon Torres
|
| 25 | 297th |
RP
Clay Hensley
|
| 26 | 304th |
C
Paul Lo Duca
|
| 27 | 321st |
SP
Matt Garza
|
| 28 | 328th |
SP
Doug Davis
|
| 29 | 345th |
SS
Maicer Izturis
|