| Round | Overall | Player |
|---|---|---|
| 1 | 9th | OF Carlos Beltran NYN |
| 2 | 16th | OF Vladimir Guerrero LAA |
| 3 | 33rd | SS Jimmy Rollins Phi |
| 4 | 40th | 1B Todd Helton Col |
| 5 | 57th | RP B.J. Ryan Tor |
| 6 | 64th | SP Curt Schilling Bos |
| 7 | 81st | RP Todd Jones Det |
| 8 | 88th | SP Mike Mussina NYA |
| 9 | 105th | SP Bronson Arroyo Cin |
| 10 | 112th | 3B Hank Blalock Tex |
| 11 | 129th | C Kenji Johjima Sea |
| 12 | 136th | OF Torii Hunter LAA |
| 13 | 153rd | SP Chien-Ming Wang NYA |
| 14 | 160th | 1B Nomar Garciaparra LAD |
| 15 | 177th | SP Vicente Padilla Tex |
| 16 | 184th | OF Jim Edmonds SD |
| 17 | 201st | 3B Jorge Cantu Cin |
| 18 | 208th | 3B Melvin Mora Bal |
| 19 | 225th | SP John Patterson Was |
| 20 | 232nd | 2B Jose Lopez Sea |
| 21 | 249th | RP Dustin Hermanson Cin |
| 22 | 256th | C Paul Lo Duca Was |
| 23 | 273rd | SS Juan Uribe ChA |
| 24 | 280th | OF Coco Crisp Bos |
| 25 | 297th | 1B Shea Hillenbrand LAD |
| 26 | 304th | SP Joe Saunders LAA |
| 27 | 321st | SP Jeff Suppan Mil |
| 28 | 328th | SP Fernando Rodney Det |
| 29 | 345th | SP Miguel Batista Sea |