| Round | Overall | Player |
|---|---|---|
| 1 | 12th | 1B Mark Teixeira Atl |
| 2 | 13th | OF Manny Ramirez Bos |
| 3 | 36th | SS Mike Young Tex |
| 4 | 37th | OF Bobby Abreu NYA |
| 5 | 60th | 1B Richie Sexson Sea |
| 6 | 61st | OF Hideki Matsui NYA |
| 7 | 84th | SP Rich Harden Oak |
| 8 | 85th | SP Jeremy Bonderman Det |
| 9 | 108th | RP Francisco Cordero Cin |
| 10 | 109th | SP Brett Myers Phi |
| 11 | 132nd | C Michael Barrett SD |
| 12 | 133rd | 2B Ian Kinsler Tex |
| 13 | 156th | SP Andy Pettitte NYA |
| 14 | 157th | 3B Morgan Ensberg SD |
| 15 | 180th | 3B Edwin Encarnacion Cin |
| 16 | 181st | SP Scott Olsen Fla |
| 17 | 204th | SP Ian Snell Pit |
| 18 | 205th | 1B Aubrey Huff Bal |
| 19 | 228th | SS Julio Lugo Bos |
| 20 | 229th | RP Jose Valverde Hou |
| 21 | 252nd | 2B Orlando Hudson Ari |
| 22 | 253rd | SP Javier Vazquez ChA |
| 23 | 276th | C Gerald Laird Tex |
| 24 | 277th | SP Cliff Lee Cle |
| 25 | 300th | OF Carlos Quentin ChA |
| 26 | 301st | SP Jeff Francis Col |
| 27 | 324th | 3B Kevin Kouzmanoff SD |
| 28 | 325th | OF Brad Wilkerson Tex |
| 29 | 348th | SP Adam Eaton Phi |