| Round | Overall | Player |
|---|---|---|
| 1 | 7th | OF Carlos Beltran NYN |
| 2 | 18th | 1B Derrek Lee ChN |
| 3 | 31st | OF Jason Bay Pit |
| 4 | 42nd | SS Hanley Ramirez Fla |
| 5 | 55th | DH Jim Thome ChA |
| 6 | 66th | 3B Ryan Zimmerman Was |
| 7 | 79th | SP Ben Sheets Mil |
| 8 | 90th | OF Johnny Damon NYA |
| 9 | 103rd | SP Chris Young SD |
| 10 | 114th | RP Chad Cordero Was |
| 11 | 127th | SP Bronson Arroyo Cin |
| 12 | 138th | 2B Jeff Kent LAD |
| 13 | 151st | 2B Josh Barfield Cle |
| 14 | 162nd | SP Randy Johnson Ari |
| 15 | 175th | SP Rich Hill ChN |
| 16 | 186th | 3B Hank Blalock Tex |
| 17 | 199th | RP Octavio Dotel Atl |
| 18 | 210th | C Kenji Johjima Sea |
| 19 | 223rd | OF Mike Cameron SD |
| 20 | 234th | OF Jonny Gomes TB |
| 21 | 247th | SS Bobby Crosby Oak |
| 22 | 258th | SP Chuck James Atl |
| 23 | 271st | SP Jeff Francis Col |
| 24 | 282nd | RP Salomon Torres Mil |
| 25 | 295th | C Ben Molina SF |
| 26 | 306th | 1B Scott Hatteberg Cin |
| 27 | 319th | SP Joe Saunders LAA |
| 28 | 330th | SP Aaron Cook Col |
| 29 | 343rd | SP Noah Lowry SF |