| Round | Overall | Player |
|---|---|---|
| 1 | 10th | DH Travis Hafner Cle |
| 2 | 15th | 1B Lance Berkman Hou |
| 3 | 34th | OF Vernon Wells Tor |
| 4 | 39th | 3B Aramis Ramirez ChN |
| 5 | 58th | OF Hideki Matsui NYA |
| 6 | 63rd | RP Trevor Hoffman SD |
| 7 | 82nd | SP Jason Schmidt LAD |
| 8 | 87th | RP Chris Ray Bal |
| 9 | 106th | SP Derek Lowe LAD |
| 10 | 111th | SP Mike Mussina NYA |
| 11 | 130th | OF Pat Burrell Phi |
| 12 | 135th | SS Julio Lugo Bos |
| 13 | 154th | C Chris Iannetta Col |
| 14 | 159th | 2B Ray Durham SF |
| 15 | 178th | OF Ken Griffey Jr Cin |
| 16 | 183rd | SP Mark Buehrle ChA |
| 17 | 202nd | SP Jason Jennings Hou |
| 18 | 207th | SP Freddy Garcia Phi |
| 19 | 226th | SS Orlando Cabrera ChA |
| 20 | 231st | 1B Casey Kotchman LAA |
| 21 | 250th | 3B Melvin Mora Bal |
| 22 | 255th | RP Armando Benitez Fla |
| 23 | 274th | C Paul Lo Duca Was |
| 24 | 279th | SP Jeff Suppan Mil |
| 25 | 298th | 2B Mark Grudzielanek KC |
| 26 | 303rd | SP Gil Meche KC |
| 27 | 322nd | SP Mark Prior ChN |
| 28 | 327th | SP Shawn Hill Was |
| 29 | 346th | SP Horacio Ramirez Sea |