| Round | Overall | Player |
|---|---|---|
| 1 | 11th | 3B Miguel Cabrera Det |
| 2 | 14th | 1B Mark Teixeira Atl |
| 3 | 35th | OF Adam Dunn Cin |
| 4 | 38th | SS Rafael Furcal LAD |
| 5 | 59th | SP Jeremy Bonderman Det |
| 6 | 62nd | SP Scott Kazmir TB |
| 7 | 83rd | SP Aaron Harang Cin |
| 8 | 86th | 2B Brian Roberts Bal |
| 9 | 107th | SP Matt Cain SF |
| 10 | 110th | RP Francisco Cordero Cin |
| 11 | 131st | OF Raul Ibanez Sea |
| 12 | 134th | OF Brian S. Giles SD |
| 13 | 155th | C Ramon Hernandez Bal |
| 14 | 158th | RP Bob Wickman Atl |
| 15 | 179th | 1B Aubrey Huff Bal |
| 16 | 182nd | SP Javier Vazquez ChA |
| 17 | 203rd | SP Greg Maddux SD |
| 18 | 206th | SS Khalil Greene SD |
| 19 | 227th | SP Oliver Perez NYN |
| 20 | 230th | SP Ian Snell Pit |
| 21 | 251st | OF David DeJesus KC |
| 22 | 254th | 3B Andy Marte Cle |
| 23 | 275th | 2B Jose Valentin NYN |
| 24 | 278th | C Gerald Laird Tex |
| 25 | 299th | 1B Sean Casey Det |
| 26 | 302nd | SP Zack Greinke KC |
| 27 | 323rd | OF David Dellucci Cle |
| 28 | 326th | SP James Shields TB |
| 29 | 347th | SP Jeff Weaver Sea |