| Round | Overall | Player |
|---|---|---|
| 1 | 6th | OF Alfonso Soriano ChN |
| 2 | 19th | OF Carlos Lee Hou |
| 3 | 30th | 3B Garrett Atkins Col |
| 4 | 43rd | RP Francisco Rodriguez LAA |
| 5 | 54th | SP Daisuke Matsuzaka Bos |
| 6 | 67th | 1B Todd Helton Col |
| 7 | 78th | 1B Carlos Guillen Det |
| 8 | 91st | 3B Bill Hall Mil |
| 9 | 102nd | SP Daniel Cabrera Bal |
| 10 | 115th | OF Michael Cuddyer Min |
| 11 | 126th | RP Takashi Saito LAD |
| 12 | 139th | SP Andy Pettitte NYA |
| 13 | 150th | 2B Ian Kinsler Tex |
| 14 | 163rd | SP Jose Contreras ChA |
| 15 | 174th | OF Mark Teahen KC |
| 16 | 187th | SP Nate Robertson Det |
| 17 | 198th | 1B Lyle Overbay Tor |
| 18 | 211th | SP Kevin Millwood Tex |
| 19 | 222nd | SP John Maine NYN |
| 20 | 235th | 3B Ty Wigginton Hou |
| 21 | 246th | OF Austin Kearns Was |
| 22 | 259th | SS J.J. Hardy Mil |
| 23 | 270th | OF Garret Anderson LAA |
| 24 | 283rd | OF Melvin Upton TB |
| 25 | 294th | SP Vicente Padilla Tex |
| 26 | 307th | C Jason Kendall Mil |
| 27 | 318th | 2B Kelly Johnson Atl |
| 28 | 331st | RP Bob Howry ChN |
| 29 | 342nd | 3B Wes Helms Phi |