| Round | Overall | Player |
|---|---|---|
| 1 | 12th | OF Vladimir Guerrero LAA |
| 2 | 13th | SP Johan Santana Min |
| 3 | 36th | C Joe Mauer Min |
| 4 | 37th | SP Roy Oswalt Hou |
| 5 | 60th | OF Ichiro Suzuki Sea |
| 6 | 61st | 3B Scott Rolen StL |
| 7 | 84th | 2B Robinson Cano NYA |
| 8 | 85th | 1B Prince Fielder Mil |
| 9 | 108th | SS Edgar Renteria Det |
| 10 | 109th | RP Bobby Jenks ChA |
| 11 | 132nd | SP Tom Glavine Atl |
| 12 | 133rd | DH Frank Thomas Tor |
| 13 | 156th | OF Moises Alou NYN |
| 14 | 157th | SP Brad Penny LAD |
| 15 | 180th | RP Ryan Dempster ChN |
| 16 | 181st | OF Jim Edmonds SD |
| 17 | 204th | SS David Eckstein StL |
| 18 | 205th | 2B Placido Polanco Det |
| 19 | 228th | 3B Brandon Inge Det |
| 20 | 229th | SP Bartolo Colon LAA |
| 21 | 252nd | SP Pedro Martinez NYN |
| 22 | 253rd | C Yadier Molina StL |
| 23 | 276th | SP Randy Wolf SD |
| 24 | 277th | OF Craig Monroe Min |
| 25 | 300th | OF Shane Victorino Phi |
| 26 | 301st | RP Braden Looper StL |
| 27 | 324th | SP Matt Morris Pit |
| 28 | 325th | OF Geoff Jenkins Mil |
| 29 | 348th | 2B Adam Kennedy StL |