| Round | Overall | Player |
|---|---|---|
| 1 | 4th | SS Hanley Ramirez Fla |
| 2 | 21st | OF Carlos Beltran NYN |
| 3 | 28th | OF Carlos Lee Hou |
| 4 | 45th | OF Alexis Rios Tor |
| 5 | 52nd | 1B Carlos Pena TB |
| 6 | 69th | 2B Ian Kinsler Tex |
| 7 | 76th | 3B Ryan Zimmerman Was |
| 8 | 93rd | OF Corey Hart Mil |
| 9 | 100th | SP Chris Young SD |
| 10 | 117th | SP Tim Lincecum Hou |
| 11 | 124th | 1B Jarrod Saltalamacchia Tex |
| 12 | 141st | SP Pedro Martinez NYN |
| 13 | 148th | SP Adam Wainwright StL |
| 14 | 165th | SP Joe Blanton Phi |
| 15 | 172nd | SP Clay Buchholz Bos |
| 16 | 189th | OF Matt Kemp LAD |
| 17 | 196th | SP Barry Zito SF |
| 18 | 213th | C Ivan Rodriguez NYA |
| 19 | 220th | 3B Josh Fields ChA |
| 20 | 237th | 3B Eric Chavez Oak |
| 21 | 244th | 1B Nick Johnson Was |
| 22 | 261st | SP Gil Meche KC |
| 23 | 268th | SP Homer Bailey Cin |
| 24 | 285th | 2B Felipe Lopez Was |
| 25 | 292nd | 2B Ray Durham Mil |
| 26 | 309th | OF Milton Bradley ChN |
| 27 | 316th | SP Tim Wakefield Bos |
| 28 | 333rd | OF Carlos Quentin ChA |
| 29 | 340th | SP Jarrod Washburn Sea |