| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | 3B David Wright NYN |
| 2 | 22nd | SP Jake Peavy SD |
| 3 | 27th | OF Alfonso Soriano ChN |
| 4 | 46th | SP Dan Haren Ari |
| 5 | 51st | 1B Adrian Gonzalez SD |
| 6 | 70th | OF Jason Bay Bos |
| 7 | 75th | 3B Mike Young Tex |
| 8 | 94th | OF Brad Hawpe Col |
| 9 | 99th | RP Francisco Cordero Cin |
| 10 | 118th | SP Jeff Francis Col |
| 11 | 123rd | 1B Carlos Guillen Det |
| 12 | 142nd | 2B Placido Polanco Det |
| 13 | 147th | RP Todd Jones Det |
| 14 | 166th | C Jason Varitek Bos |
| 15 | 171st | 2B Freddy Sanchez Pit |
| 16 | 190th | RP Chad Cordero Was |
| 17 | 195th | OF Johnny Damon NYA |
| 18 | 214th | 3B Ty Wigginton Bal |
| 19 | 219th | SS Stephen Drew Ari |
| 20 | 238th | SP Tom Glavine Atl |
| 21 | 243rd | 1B Mike Jacobs Fla |
| 22 | 262nd | OF Travis Buck Oak |
| 23 | 267th | OF Moises Alou NYN |
| 24 | 286th | SP Noah Lowry SF |
| 25 | 291st | SP Paul Byrd Bos |
| 26 | 310th | C Ryan Doumit Pit |
| 27 | 315th | C Paul Lo Duca Was |
| 28 | 334th | SP Carlos Silva Sea |
| 29 | 339th | SP Curt Schilling Bos |