| Round | Overall | Player |
|---|---|---|
| 1 | 6th | 1B Miguel Cabrera Det |
| 2 | 19th | OF Vladimir Guerrero LAA |
| 3 | 30th | OF Manny Ramirez LAD |
| 4 | 43rd | SP Carlos Zambrano ChN |
| 5 | 54th | SP Scott Kazmir TB |
| 6 | 67th | C Jorge Posada NYA |
| 7 | 78th | SP Daisuke Matsuzaka Bos |
| 8 | 91st | RP Trevor Hoffman Mil |
| 9 | 102nd | 1B Paul Konerko ChA |
| 10 | 115th | OF Jermaine Dye ChA |
| 11 | 126th | SP Jered Weaver LAA |
| 12 | 139th | SP Philip Hughes NYA |
| 13 | 150th | OF Kosuke Fukudome ChN |
| 14 | 163rd | SS Jhonny Peralta Cle |
| 15 | 174th | SP Andy Pettitte NYA |
| 16 | 187th | 1B Ryan Garko Cle |
| 17 | 198th | RP Carlos Marmol ChN |
| 18 | 211th | 3B Scott Rolen Tor |
| 19 | 222nd | SP Ubaldo Jimenez Col |
| 20 | 235th | OF Garret Anderson LAA |
| 21 | 246th | 2B Orlando Hudson Ari |
| 22 | 259th | 3B Casey Blake LAD |
| 23 | 270th | SS Julio Lugo Bos |
| 24 | 283rd | SP Nate Robertson Det |
| 25 | 294th | RP Kerry Wood ChN |
| 26 | 307th | C Yorvit Torrealba Col |
| 27 | 318th | SP Joe Saunders LAA |
| 28 | 331st | 2B Asdrubal Cabrera Cle |
| 29 | 342nd | SP Wandy Rodriguez Hou |