| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | SS Hanley Ramirez Fla |
| 2 | 23rd | 1B Lance Berkman Hou |
| 3 | 26th | OF Melvin Upton TB |
| 4 | 47th | C Russell Martin LAD |
| 5 | 50th | SP Roy Oswalt Hou |
| 6 | 71st | 2B Brian Roberts Bal |
| 7 | 74th | RP Takashi Saito Bos |
| 8 | 95th | SP Francisco Liriano Min |
| 9 | 98th | RP Bobby Jenks ChA |
| 10 | 119th | OF Corey Hart Mil |
| 11 | 122nd | SP Clay Buchholz Bos |
| 12 | 143rd | OF Eric Byrnes Ari |
| 13 | 146th | 3B Chone Figgins LAA |
| 14 | 167th | 3B Evan Longoria TB |
| 15 | 170th | SP Derek Lowe Atl |
| 16 | 191st | SP Hiroki Kuroda LAD |
| 17 | 194th | 2B Asdrubal Cabrera Cle |
| 18 | 215th | 1B Joey Votto Cin |
| 19 | 218th | SP Ian Kennedy NYA |
| 20 | 239th | OF Justin Upton Ari |
| 21 | 242nd | SP Manny Parra Mil |
| 22 | 263rd | C J.R. Towles Hou |
| 23 | 266th | 3B Bill Hall Mil |
| 24 | 287th | SP Aaron Cook Col |
| 25 | 290th | OF Franklin Gutierrez Cle |
| 26 | 311th | SP Aaron Laffey Cle |
| 27 | 314th | SS Jason Bartlett TB |
| 28 | 335th | SP Dave Bush Mil |
| 29 | 338th | 3B Ian Stewart Col |