| Round | Overall | Player |
|---|---|---|
| 1 | 9th | SS Jimmy Rollins Phi |
| 2 | 16th | 1B Mark Teixeira NYA |
| 3 | 33rd | 3B Garrett Atkins Col |
| 4 | 40th | OF Magglio Ordonez Det |
| 5 | 57th | SP Dan Haren Ari |
| 6 | 64th | C Jorge Posada NYA |
| 7 | 81st | SP James Shields TB |
| 8 | 88th | SP Tim Hudson Atl |
| 9 | 105th | OF Ken Griffey Jr ChA |
| 10 | 112th | OF Brad Hawpe Col |
| 11 | 129th | SP Yovani Gallardo Mil |
| 12 | 136th | RP Jose Valverde Hou |
| 13 | 153rd | RP Brad Lidge Phi |
| 14 | 160th | SP Mark Buehrle ChA |
| 15 | 177th | SP Ian Snell Pit |
| 16 | 184th | OF Jack Cust Oak |
| 17 | 201st | 2B Placido Polanco Det |
| 18 | 208th | 1B Nick Johnson Was |
| 19 | 225th | SP Joba Chamberlain NYA |
| 20 | 232nd | RP Troy Percival TB |
| 21 | 249th | SP Paul Byrd Bos |
| 22 | 256th | SP Jeremy Guthrie Bal |
| 23 | 273rd | 2B Kazuo Matsui Hou |
| 24 | 280th | OF Milton Bradley ChN |
| 25 | 297th | SS Alex Gonzalez Cin |
| 26 | 304th | 3B Jorge Cantu Fla |
| 27 | 321st | C John Buck KC |
| 28 | 328th | SP Boof Bonser Min |
| 29 | 345th | RP Miguel Batista Sea |