| Round | Overall | Player |
|---|---|---|
| 1 | 10th | OF Ryan Braun Mil |
| 2 | 15th | SS Derek Jeter NYA |
| 3 | 34th | C Brian McCann Atl |
| 4 | 39th | 1B Derrek Lee ChN |
| 5 | 58th | 2B Ian Kinsler Tex |
| 6 | 63rd | 3B Garrett Atkins Col |
| 7 | 82nd | RP Mariano Rivera NYA |
| 8 | 87th | OF Bobby Abreu NYA |
| 9 | 106th | OF Delmon Young Min |
| 10 | 111th | OF Josh Hamilton Tex |
| 11 | 130th | SP Joba Chamberlain NYA |
| 12 | 135th | SP Hiroki Kuroda LAD |
| 13 | 154th | SP Oliver Perez NYN |
| 14 | 159th | SS Yunel Escobar Atl |
| 15 | 178th | OF Kosuke Fukudome ChN |
| 16 | 183rd | SP Franklin Morales Col |
| 17 | 202nd | OF Cameron Maybin Fla |
| 18 | 207th | OF Wily Pena Was |
| 19 | 226th | C Carlos Ruiz Phi |
| 20 | 231st | 1B Nomar Garciaparra LAD |
| 21 | 250th | 1B Conor Jackson Ari |
| 22 | 255th | 2B Asdrubal Cabrera Cle |
| 23 | 274th | RP Eric Gagne Mil |
| 24 | 279th | SP Cliff Lee Cle |
| 25 | 298th | SP Kevin Slowey Min |
| 26 | 303rd | SP Edison Volquez Cin |
| 27 | 322nd | SP Anthony Reyes Cle |
| 28 | 327th | SP John Lannan Was |
| 29 | 346th | SP Aaron Laffey Cle |