| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | SS Hanley Ramirez Fla |
| 2 | 23rd | 1B Mark Teixeira NYA |
| 3 | 26th | OF Adam Dunn Ari |
| 4 | 47th | 2B Robinson Cano NYA |
| 5 | 50th | 1B Adrian Gonzalez SD |
| 6 | 71st | OF Nick Markakis Bal |
| 7 | 74th | 3B Ryan Zimmerman Was |
| 8 | 95th | OF Nick Swisher ChA |
| 9 | 98th | 3B Alex Gordon KC |
| 10 | 119th | RP Billy Wagner NYN |
| 11 | 122nd | RP Francisco Cordero Cin |
| 12 | 143rd | 1B Jarrod Saltalamacchia Tex |
| 13 | 146th | SP Mark Buehrle ChA |
| 14 | 167th | SP A.J. Burnett Tor |
| 15 | 170th | 1B Billy Butler KC |
| 16 | 191st | SP Jon Garland Ari |
| 17 | 194th | OF Justin Upton Ari |
| 18 | 215th | SP Andy Pettitte NYA |
| 19 | 218th | SP Matt Garza TB |
| 20 | 239th | C Ben Molina SF |
| 21 | 242nd | SP Jon Lester Bos |
| 22 | 263rd | RP Jason Isringhausen StL |
| 23 | 266th | SP Matt Capps Pit |
| 24 | 287th | SP Manny Parra Mil |
| 25 | 290th | 2B Luis Castillo NYN |
| 26 | 311th | SS Jason Bartlett TB |
| 27 | 314th | SP Aaron Cook Col |
| 28 | 335th | SP Randy Wolf LAD |
| 29 | 338th | OF Geoff Jenkins Phi |