| Round | Overall | Player |
|---|---|---|
| 1 | 12th | 2B Chuck Knoblauch NYA |
| 2 | 13th | P Randy Johnson Sea |
| 3 | 36th | OF Sammy Sosa ChN |
| 4 | 37th | 1B Tony Clark Det |
| 5 | 60th | OF Jay Buhner Sea |
| 6 | 61st | OF Ellis Burks Col |
| 7 | 84th | P Mark Wohlers Atl |
| 8 | 85th | SS Barry Larkin Cin |
| 9 | 108th | OF Rondell White Mon |
| 10 | 109th | C Todd Greene Ana |
| 11 | 132nd | 1B John Jaha Mil |
| 12 | 133rd | P Kevin Appier KC |
| 13 | 156th | P Armando Benitez Bal |
| 14 | 157th | P Chuck Finley Ana |
| 15 | 180th | DH Jose Canseco Tor |
| 16 | 181st | C Todd Hundley NYN |
| 17 | 204th | OF Eric Davis Bal |
| 18 | 205th | 3B Jeff Cirillo Mil |
| 19 | 228th | P Alan Benes StL |
| 20 | 229th | P Dustin Hermanson Mon |
| 21 | 252nd | C Chris Widger Mon |
| 22 | 253rd | SS Pokey Reese Cin |
| 23 | 276th | P Jason Dickson Ana |
| 24 | 277th | P Chad Ogea Cle |
| 25 | 300th | OF Karim Garcia Ari |
| 26 | 301st | SS Miguel Tejada Oak |