| Round | Overall | Player |
|---|---|---|
| 1 | 5th | 2B Chase Utley Phi |
| 2 | 20th | OF Carlos Lee Hou |
| 3 | 29th | 3B Aramis Ramirez ChN |
| 4 | 44th | 1B Carlos Guillen Det |
| 5 | 53rd | SP Roy Halladay Tor |
| 6 | 68th | SS Miguel Tejada Hou |
| 7 | 77th | C Ivan Rodriguez NYA |
| 8 | 92nd | SP Aaron Harang Cin |
| 9 | 101st | OF Matt Kemp LAD |
| 10 | 116th | SP James Shields TB |
| 11 | 125th | SP Francisco Liriano Min |
| 12 | 140th | SP Rich Hill Bal |
| 13 | 149th | 1B Carlos Delgado NYN |
| 14 | 164th | SP Jeremy Bonderman Det |
| 15 | 173rd | OF Jose Guillen KC |
| 16 | 188th | OF Raul Ibanez Sea |
| 17 | 197th | OF Josh Willingham Fla |
| 18 | 212th | OF Garret Anderson LAA |
| 19 | 221st | 2B Freddy Sanchez Pit |
| 20 | 236th | 3B Mark Reynolds Ari |
| 21 | 245th | SP Kenny Rogers Det |
| 22 | 260th | SP Andrew Miller Fla |
| 23 | 269th | SP Noah Lowry SF |
| 24 | 284th | SP Brian Bannister KC |
| 25 | 293rd | 2B Felipe Lopez Was |
| 26 | 308th | SP Paul Byrd Bos |
| 27 | 317th | OF Milton Bradley ChN |
| 28 | 332nd | RP Troy Percival TB |
| 29 | 341st | C Ryan Doumit Pit |