| Round | Overall | Player |
|---|---|---|
| 1 | 11th | 1B Prince Fielder Mil |
| 2 | 14th | OF Grady Sizemore Cle |
| 3 | 35th | DH Travis Hafner Cle |
| 4 | 38th | SS Troy Tulowitzki Col |
| 5 | 59th | OF Jeff Francoeur Atl |
| 6 | 62nd | SP Felix Hernandez Sea |
| 7 | 83rd | 2B Rickie Weeks Mil |
| 8 | 86th | OF Corey Hart Mil |
| 9 | 107th | 3B Evan Longoria TB |
| 10 | 110th | SP John Smoltz Bos |
| 11 | 131st | SP Chad Billingsley LAD |
| 12 | 134th | SP Matt Cain SF |
| 13 | 155th | SP Brett Myers Phi |
| 14 | 158th | OF Rick Ankiel StL |
| 15 | 179th | 3B Josh Fields ChA |
| 16 | 182nd | OF Jay Bruce Cin |
| 17 | 203rd | SP Gil Meche KC |
| 18 | 206th | C Ronny Paulino Pit |
| 19 | 227th | SP Ian Kennedy NYA |
| 20 | 230th | 1B Ryan Garko Cle |
| 21 | 251st | SP Jair Jurrjens Atl |
| 22 | 254th | SS David Eckstein SD |
| 23 | 275th | SP Clayton Kershaw LAD |
| 24 | 278th | SP Carlos Silva Sea |
| 25 | 299th | C Paul Lo Duca Was |
| 26 | 302nd | SP Doug Davis Ari |
| 27 | 323rd | 2B Matt Antonelli SD |
| 28 | 326th | SP David Price TB |
| 28 | 326th | SP David Price TB |
| 29 | 347th | OF Fernando Martinez NYN |