| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | 1B Miguel Cabrera Det |
| 2 | 22nd | SP Johan Santana NYN |
| 3 | 27th | OF Curtis Granderson Det |
| 4 | 46th | SP Dan Haren Ari |
| 5 | 51st | C Jorge Posada NYA |
| 6 | 70th | RP Jon Papelbon Bos |
| 7 | 75th | OF Torii Hunter LAA |
| 8 | 94th | SS Jhonny Peralta Cle |
| 9 | 99th | 1B Todd Helton Col |
| 10 | 118th | OF Ken Griffey Jr ChA |
| 11 | 123rd | SP Tim Hudson Atl |
| 12 | 142nd | 2B Aaron Hill Tor |
| 13 | 147th | SS Rafael Furcal LAD |
| 14 | 166th | 3B Casey Blake LAD |
| 15 | 171st | SP Jeff Francis Col |
| 16 | 190th | OF Michael Cuddyer Min |
| 17 | 195th | OF Jack Cust Oak |
| 18 | 214th | RP Todd Jones Det |
| 19 | 219th | 2B Kazuo Matsui Hou |
| 20 | 238th | OF Austin Kearns Was |
| 21 | 243rd | OF Colby Rasmus StL |
| 22 | 262nd | 1B Casey Kotchman Atl |
| 23 | 267th | RP Brandon Lyon Det |
| 24 | 286th | C Dioner Navarro TB |
| 25 | 291st | OF Barry Bonds SF |
| 26 | 310th | SP Nate Robertson Det |
| 27 | 315th | SP Jeff Suppan Mil |
| 28 | 334th | OF Melky Cabrera NYA |
| 29 | 339th | SP Curt Schilling Bos |