| Round | Overall | Player |
|---|---|---|
| 1 | 6th | SS Jimmy Rollins Phi |
| 2 | 19th | OF Magglio Ordonez Det |
| 3 | 30th | C Victor Martinez Cle |
| 4 | 43rd | OF Manny Ramirez LAD |
| 5 | 54th | 1B Carlos Pena TB |
| 6 | 67th | 2B Dan Uggla Fla |
| 7 | 78th | SP Roberto Hernandez Cle |
| 8 | 91st | 3B Mike Lowell Bos |
| 9 | 102nd | OF Eric Byrnes Ari |
| 10 | 115th | SP Kelvim Escobar LAA |
| 11 | 126th | RP Bobby Jenks ChA |
| 12 | 139th | SP John Maine NYN |
| 13 | 150th | OF Aaron Rowand SF |
| 14 | 163rd | RP Trevor Hoffman Mil |
| 15 | 174th | SS Orlando Cabrera ChA |
| 16 | 187th | 3B Melvin Mora Bal |
| 17 | 198th | SP Ted Lilly ChN |
| 18 | 211th | RP Rafael Soriano Atl |
| 19 | 222nd | 2B Mark Ellis Oak |
| 20 | 235th | SP Randy Johnson Ari |
| 21 | 246th | 3B Bill Hall Mil |
| 22 | 259th | 1B Daric Barton Oak |
| 23 | 270th | SP Bartolo Colon ChA |
| 24 | 283rd | RP Joe Borowski Cle |
| 25 | 294th | C A.J. Pierzynski ChA |
| 26 | 307th | SP Orlando Hernandez NYN |
| 27 | 318th | 1B Aubrey Huff Bal |
| 28 | 331st | OF Moises Alou NYN |
| 29 | 342nd | OF Ryan Church NYN |