| Round | Overall | Player |
|---|---|---|
| 1 | 9th | 3B David Wright NYN |
| 2 | 16th | OF Alfonso Soriano ChN |
| 3 | 33rd | 1B Lance Berkman Hou |
| 4 | 40th | OF Ichiro Suzuki Sea |
| 5 | 57th | OF Chris Young Ari |
| 6 | 64th | SP Philip Hughes NYA |
| 7 | 81st | 2B Howie Kendrick LAA |
| 8 | 88th | SP Chris Young SD |
| 9 | 105th | SP Jered Weaver LAA |
| 10 | 112th | DH Gary Sheffield Det |
| 11 | 129th | SS Stephen Drew Ari |
| 12 | 136th | SP Clay Buchholz Bos |
| 13 | 153rd | DH Hank Blalock Tex |
| 14 | 160th | 2B Jeff Kent LAD |
| 15 | 177th | OF Lastings Milledge Was |
| 16 | 184th | C Kenji Johjima Sea |
| 17 | 201st | C Ramon Hernandez Bal |
| 18 | 208th | SS Yuniesky Betancourt Sea |
| 19 | 225th | 1B Jason Giambi Oak |
| 20 | 232nd | SP Barry Zito SF |
| 21 | 249th | SP Boof Bonser Min |
| 22 | 256th | SP Mike Mussina NYA |
| 23 | 273rd | DH Frank Thomas Oak |
| 24 | 280th | OF Jason Kubel Min |
| 25 | 297th | SP Ervin Santana LAA |
| 26 | 304th | SP Micah Owings Ari |
| 27 | 321st | SP Jesse Litsch Tor |
| 28 | 328th | SP Wandy Rodriguez Hou |
| 29 | 345th | SP Kevin Millwood Tex |