| Round | Overall | Player |
|---|---|---|
| 1 | 4th | 3B David Wright NYN |
| 2 | 21st | OF Carlos Lee Hou |
| 3 | 28th | OF Adam Dunn Ari |
| 4 | 45th | SP Josh Beckett Bos |
| 5 | 52nd | 1B Carlos Guillen Det |
| 6 | 69th | SP John Lackey LAA |
| 7 | 76th | RP Joe Nathan Min |
| 8 | 93rd | 2B Kelly Johnson Atl |
| 9 | 100th | SP Daisuke Matsuzaka Bos |
| 10 | 117th | SP Dontrelle Willis Det |
| 11 | 124th | C Kenji Johjima Sea |
| 12 | 141st | RP Joe Borowski Cle |
| 13 | 148th | SS Jhonny Peralta Cle |
| 14 | 165th | SP Barry Zito SF |
| 15 | 172nd | OF Juan Pierre LAD |
| 16 | 189th | SP Mark Buehrle ChA |
| 17 | 196th | SP Rich Hill Bal |
| 18 | 213th | 3B Eric Chavez Oak |
| 19 | 220th | 1B Richie Sexson Sea |
| 20 | 237th | OF Aaron Rowand SF |
| 21 | 244th | 2B Jose Lopez Sea |
| 22 | 261st | OF Mark Teahen KC |
| 23 | 268th | SP Kevin Gregg Fla |
| 24 | 285th | C A.J. Pierzynski ChA |
| 25 | 292nd | OF Wily Pena Was |
| 26 | 309th | SP Jason Schmidt LAD |
| 27 | 316th | OF Barry Bonds SF |
| 28 | 333rd | SS Erick Aybar LAA |
| 29 | 340th | SP Daniel Cabrera Bal |