| Round | Overall | Player |
|---|---|---|
| 1 | 10th | 1B Mark McGwire StL |
| 2 | 15th | P Greg Maddux Atl |
| 3 | 34th | OF Raul Mondesi LA |
| 4 | 39th | 2B Mike Lansing Col |
| 5 | 58th | P Trevor Hoffman SD |
| 6 | 63rd | OF Tony Gwynn SD |
| 7 | 82nd | C Dan Wilson Sea |
| 8 | 87th | P Ismael Valdez LA |
| 9 | 106th | 3B Edgardo Alfonzo NYN |
| 10 | 111th | OF Jeromy Burnitz Mil |
| 11 | 130th | P Jeff Shaw Cin |
| 12 | 135th | OF Al Martin Pit |
| 13 | 154th | P Jamie Moyer Sea |
| 14 | 159th | P Ricky Bottalico Phi |
| 15 | 178th | SS Neifi Perez Col |
| 16 | 183rd | OF Todd Helton Col |
| 17 | 202nd | P Andy Ashby SD |
| 18 | 207th | 2B Scott Spiezio Oak |
| 19 | 226th | C John Flaherty TB |
| 20 | 231st | OF Shannon Stewart Tor |
| 21 | 250th | P Matt Karchner ChA |
| 22 | 255th | 1B Lee Stevens Tex |
| 23 | 274th | P Tom Candiotti Oak |
| 24 | 279th | 1B Dave Nilsson Mil |
| 25 | 298th | P Dwight Gooden Cle |
| 26 | 303rd | 3B Kevin Orie ChN |