| Round | Overall | Player |
|---|---|---|
| 1 | 10th | 2B Chase Utley Phi |
| 2 | 15th | SP Johan Santana NYN |
| 3 | 34th | 1B Justin Morneau Min |
| 4 | 39th | DH Travis Hafner Cle |
| 5 | 58th | SP Cole Hamels Phi |
| 6 | 63rd | SP Carlos Zambrano ChN |
| 7 | 82nd | OF Brad Hawpe Col |
| 8 | 87th | OF Torii Hunter LAA |
| 9 | 106th | 3B Evan Longoria TB |
| 10 | 111th | SP Jered Weaver LAA |
| 11 | 130th | SP Yovani Gallardo Mil |
| 12 | 135th | 1B James Loney LAD |
| 13 | 154th | OF Ken Griffey Jr ChA |
| 14 | 159th | C Geovany Soto ChN |
| 15 | 178th | DH Hank Blalock Tex |
| 16 | 183rd | SS Yunel Escobar Atl |
| 17 | 202nd | OF Gary Matthews Jr. LAA |
| 18 | 207th | SP Tom Gorzelanny Pit |
| 19 | 226th | OF Cameron Maybin Fla |
| 20 | 231st | C Mike Napoli LAA |
| 21 | 250th | SP David Price TB |
| 21 | 250th | SP David Price TB |
| 22 | 255th | SS Julio Lugo Bos |
| 23 | 274th | 2B Asdrubal Cabrera Cle |
| 24 | 279th | OF Travis Buck Oak |
| 25 | 298th | SP Clayton Kershaw LAD |
| 26 | 303rd | SP Chuck James Atl |
| 27 | 322nd | SP Scott Baker Min |
| 28 | 327th | OF Jonny Gomes Cin |
| 29 | 346th | SS Ryan Theriot ChN |